baseline package in R
This package is a collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. This package is used, e.g., to remove background effects from spectra originating from various types of spectroscopy and spectrometry.
CNOGpro package in R
The CNOGpro package encompasses methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms.
Familias is a free software for probability calculations when inferring paternity and identification based on DNA data, and allows for multiple alternative pedigrees to be handled.
FamLink is a free software that provides functions for likelihood calculation for family relationships/pedigrees using pairwise linked DNA marker data.
FamLinkX is a free software that provides functions for likelihood calculation for family relationships/pedigrees using X-chromosomal genetic marker data.
microclass package in R
The microclass package has functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.
microcontax package in R
The microcontax package is a consensus taxonomy for prokaryotes that employs a set of datasets for best possible taxonomic classification based on 16S rRNA sequence data.
micropan package in R
The micropan package is a collection of functions for computations and visualizations of microbial pan-genomes.
The microRMS package provides tools for handling and analyzing quantitative data on microbiota generated by Reduced Metagenome Sequencing (RMS).
microseq package in R
The microseq package provides basic functions for microbial sequence data analysis.
NMBU/UMB R repository
At BIAS, we are heavily engaged in teaching courses in statistics and bioinformatics to students (for a list of courses see our master's program page). The NMBU/UMB repository contains R-packages and documentation for students taking courses at NMBU that use R or R Commander.
The Plant Genome Integrative Explorer (PlantGenIE) is a collection of interoperable web resources for searching, visualizing and analyzing genomics and transcriptomics data for different plant species.
pls package in R
The pls package encompasses various multivariate regression methods such as Partial Least Squares Regression (PLSR), Principal Component Regression (PCR), and Canonical Powered Partial Least Squares (CPPLS).
SalMotifDB is a cis-regulatory motif database for salmonid species.
simrel package in R
The simrel package allows users to simulate multi-response linear model data. It can be used as a tool for model comparison, and educational purposes.
Published 1. November 2019 - 13:38 - Updated 1. February 2020 - 13:11