
BIO: As a microbial ecologist and physiologist, Professor Phil B. Pope leads the Microbial Ecology and Meta-Omics (MEMO) group and has greater than 15 years' experience using multi-omic tools to deconvolute the intimate genomic and physiological relationships between microbial populations within complex microbiomes that are integral to gut function, health and nutrition of animals. Phil has a BSc from Griffith University (Queensland, Australia) majoring in physical mathematics, with first-class honours in environmental microbiology (2003); a PhD in metagenomics from Griffith University (2007); and postdoc experience at CSIRO with Professor Mark Morrison (2007-2010). Phil moved to Europe in 2010 as a Marie Sklodowska-Curie Incoming fellow with renowned enzymologist Prof. Vincent Eijsink and started his group with an ERC starting grant in 2014. Phil’s current research seeks to expand microbiome "omic" approaches to envelop additional “molecular layers” from the animal holobiont (i.e. host genome, transcriptome and proteome), a concept otherwise known as “holo-omics”. Phil is the PI of a Novo Nordisk Fonden fellowship “SuPAcow” and coordinator for the ERA-Net project “ImprovAFish”, which both seek to modulate the feed-microbiome-host axis in cows and fish, respectively. Phil also makes central scientific and management contributions to large national and European collaborative efforts that includes work package leadership roles in two ~10 mEUR Horizon 2020 projects (HoloRuminant and 3D’omics) that are focused on animal-microbiome interactions. 70+ peer-reviewed articles that have attracted 6500+ citations (i10-index: 70, h-index: 37).
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Check out our work at The MEMO group (Microbial Ecology and Meta-Omics).
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LINKS:
Google Scholar: http://tinyurl.com/citations-phil-pope
PUBMED: http://tinyurl.com/pubmed-phil-pope
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Fagfelt
- Metagenomics
- Microbial ecology
- Bioinformatics
- Bioinformatics - microbial genomics
- Environmental Microbiology
Publikasjoner
Forskerprofil med publikasjoner i vitenarkivet
- L. La Rosa, M.P. Ostrowski, A.V.P. de Leon, L.S. McKee, J. Larsbrink, V.G. H. Eijsink, E.C. Lowe, E.C. Martens, P.B. Pope (2022). Glycan processing in gut microbiomes. Current Opinions in Microbiology. https://doi.org/10.1016/j.mib.2022.102143
- D. Prelman, M. Martinez-Alvaro, S. Morais, I. Altshuler, L.H. Hagen, E. Jami, R. Roehe, *P.B. Pope, *I. Mizrahi (2022).Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development. * equal contributions.Annu. Rev. Anim. Biosci. doi: 10.1146/annurev-animal-013020-020412
- Van Den Bossche, M.Ø. Arntzen, D. Becher, D. Benndorf, C. Henry, P. Jagtap, N. Jehmlich, C. Juste, B.J. Kunath, B. Mesuere, T. Muth, P.B. Pope, J. Seifert, A. Tanca, S. Uzzau, J. Armengaud, R. Hettich (2021). The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome 9; 243.
- K.R. Jonassen, L.H. Hagen, S.H.W. Vick, M.Ø. Arntzen, Vincent G. H. Eijsink, Å. Frostegård, P. Lycus, L. Molstad, P.B. Pope, L.R. Bakken (2021). Nitrous oxide respiring bacteria in biogas digestates for reduced agricultural emissions. ISME J. doi: 10.1038/s41396-021-01101-x
- F. Xie, W. Jin, H. Si, Y. Yuan, Y. Tao, J. Liu, X. Wang, C. Yang, Q. Li, X. Yan, L. Lin, Q. Jiang, L. Zhang, C. Guo, C. Greening, R. Heller, L. Guan, P.B. Pope, Z. Tan, G. Li, W. Zhu, W. Wang, M. Wang, Q. Qiu, Z. Li, S. Mao (2021). An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants. Microbiome 9; 137
- L.S. McKee, S.L. La Rosa, B. Westereng, V.G.H. Eijsink, P.B. Pope, J. Larsbrink (2021). Polysaccharide degradation by the Bacteroidetes: mechanisms and nomenclature. Environ. Microbiol. Rep. https://doi.org/10.1111/1758-2229.12980
- L.J. Lindstad, G. Lo, S. Leivers, L. Michalak, Z. Lu, G.V. Pereira, Å.K. Rørh, E.C. Martens, L.S. McKee, S.H. Duncan, B. Westereng, P.B. Pope, S.L. La Rosa (2021). Human gut Faecalibacterium prausnitzii deploy a highly efficient conserved system to cross-feed on β-mannan-derived oligosaccharides. mBio 12; e03628-20
- S. Mehta, M. Crane, E. Leith, B. Batut, S. Hiltemann, M.Ø. Arntzen, P.B. Pope, B.J. Kunath, F. Delogu, R. Sajulga, P. Kumar, J.E. Johnson, T.J. Griffin, P.D. Jagtap. ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research 10; 103 (https://doi.org/10.12688/f1000research.28608.2)
- K. Jameson, G. Mathiesen, P.B. Pope, B. Westereng, S.L. La Rosa (2021). Biochemical characterization of two cellobiose 2-epimerases and application for efficient production of lactulose and epilactose. Curr Res Biotechnol. doi.org/10.1016/j.crbiot.2021.02.003
- M.A. Strand, Y. Jin, S.R. Sandve, P.B. Pope, T.R. Hvidsten (2021). Trans-kingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon. Comput Struct Biotechnol J. doi: 10.1016/j.csbj.2021.01.038
- L. Michalak, J.C. Gaby, L. Lagos, S.L. La Rosa, T.R. Hvidsten, C. Tétard-Jones, W.G.T. Willats, N. Terrapon, V. Lombard, B. Henrissat, J. Dröge, M.Ø. Arntzen, L.H. Hagen, M. Øverland, P.B. Pope*, B. Westereng* (2020). Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. *equal contributions. Nature Communications. 11; 5773
- Nayfach, S. Roux, R. Seshadri, D. Udwary, N. Varghese, F. Schulz, D. Wu, D. Paez-Espino, I-M. Chen, M. Huntemann, K. Palaniappan, J. Ladau, S. Mukherjee, T.B.K. Reddy, T. Nielsen, E. Kirton, J.P. Faria, J.N. Edirisinghe, C.S. Henry, S.P. Jungbluth, D. Chivian, P. Dehal, E.M. Wood-Charlson, A.P. Arkin, S.Tringe, A.Visel, IMG/M Data Consortium, T. Woyke, N.J. Mouncey, N.N. Ivanova, N.C. Kyrpides, E.A. Eloe-Fadrosh (2020). A Genomic Catalogue of Earth’s Microbiomes. Nature Biotech. doi: 10.1038/s41587-020-0718-6
- F. Delogu, B.J. Kunath, P.N. Evans, M.Ø. Arntzen, T.R. Hvidsten, P.B. Pope (2020). Integration of absolute multi-omics reveals translational and metabolic interplay in mixed-kingdom microbiomes. Nature Communications. doi.org/10.1038/s41467-020-18543-0
- L.H. Hagen, C.G. Brooke, C. Shaw, I. Brand-Thomas, A.D. Norbeck, H. Piao, M.Ø. Arntzen, H. Brewer, A. Copeland, N. Isern, A. Shukla, V. Lombard, B. Henrissat, M. O’Malley, I. Grigoriev, S.G. Tringe, R.I. Mackie, L. Pasa-Tolic, P.B. Pope, M. Hess (2020). Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. ISME J. doi.org/10.1038/s41396-020-00769-x
- S. Mazurkewich, R. Helland, A.K. MacKenzie, V.G.H. Eijsink, P.B. Pope, G. Brändén, J. Larsbrink (2020). Structural analysis of the enzymes from the Chitin Utilization Locus of Flavobacterium johnsoniae. Sci. Rep. 10; 13775
- M. Shaffer, M.A. Borton, B.B. McGivern, L.M. Solden, A.A. Zayed, S.L. La Rosa, P. Liu, J. Rodriguez-Ramos, A.B. Narrowe, B. Bolduc, R.A. Daly, G. Smith, D. Vik, P.B. Pope, M.B. Sullivan, S. Roux, K.C. Wrighton (2020). Distilling microbial metabolism to automate the curation of microbiome function. Nucl. Acids Res. doi: 10.1093/nar/gkaa621
- T.O. Andersen, L.H. Hagen, M.Ø. Arntzen, P.B. Pope (2020). Rumen metaproteomics: Closer to linking rumen microbial activities to animal productivity traits. Methods. https://doi.org/10.1016/j.ymeth.2020.07.011
- Kujawska, S.L. La Rosa, P.B. Pope, L. Hoyles, A. McCartney, L.J. Hall (2020). Succession of Bifidobacterium longum strains in response to the changing early life nutritional environment reveals specific adaptations to distinct dietary substrates. iScience. 23; 101368
- A. Gilbert, E. Townsend, K.S. Crew, T. Hitch, J. Friedersdorff, C.J. Creevey, P.B. Pope, D. Ouwerkerk, E. Jameson (2020). Rumen virus populations: technological advances enhancing current understanding. Front. Microbiol. 11; 450
- Minniti, S.R. Sandve, S. Linden, P.B. Pope, M.Ø. Arntzen, G. Vaaje-Kolstad (2019). The farmed Atlantic salmon (Salmo salar) skin-mucus proteome and its nutrient potential for the resident bacterial community. Genes. 10; e515
- B.J. Kunath, G. Minniti, M. Skaugen, L.H. Hagen, G. Vaaje-Kolstad, V.G.H. Eijsink, P.B. Pope, M.Ø. Arntzen (2019). Metaproteomics: Sample Preparation and Methodological Considerations. Adv Exp Med Biol. 1073:187-215
- A. Salgado-Flores, A.T. Tveit, A.D. Wright, P.B. Pope, M.A. Sundset (2019). Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. PLoS One. 14:e0213503
- S. Leanti La Rosa, M.L. Leth, L. Michalak, M.E. Hansen, M.Ø. Arntzen, P.B. Pope, E.C. Martens, M.A. Hachem, B. Westereng (2019). The Human Gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans. Nature Communications. 10:905.
- S. Leanti La Rosa, V. Kachrimanidou, F. Buffetto, P.B. Pope, N. Pudlo, E.C. Martens, R. Rastall, G. Gibson, B. Westereng (2019). Wood-derived Dietary Fibers Promote Beneficial Human Gut Microbiota. mSphere. 4: e00554-18
- B.J. Kunath, F. Delogu, M.Ø. Arntzen, V.G.H. Eijsink, T.R. Hvidsten, P.B. Pope (2018) From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. ISME J. 13: 603-617.
- N. Liu, H. Li, M.G. Chevrette, L. Zhang, L. Cao, H. Zhou, X. Zhou, Z. Zhou, P.B. Pope, C.R. Currie, Y. Huang and Q. Wang (2018). Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood feeding higher termite. ISME J. 13: 104-117.
- M. Taillefer, M.Ø. Arntzen, B. Henrissat, P.B. Pope, J. Larsbrink (2018). Proteomic dissection of the cellulolytic machineries used by soil dwelling Bacteroidetes. mSystems. doi: 10.1128/mSystems.00240-18
- L.M. Solden, A.E. Naas, S. Roux, R.A. Daly, W.B. Collins, C.D. Nicora, S.O. Purvine, J. Schuckel, B. Jorgensen, W.G.T. Willats, D.E. Spalinger, M.S. Lipton,M.B. Sullivan, P.B. Pope, K.C. Wrighton (2018). Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem. Nature Microbiology. doi: 10.1038/s41564-018-0225-4
- J.B. Emerson, S. Roux, J.R. Brum, B. Bolduc, B.J. Woodcroft, H.B. Jang, C.M. Singleton, L.M. Solden, A.E. Naas, J.A. Boyd, S.B. Hodgkins, R.M. Wilson, G.Trubl, C. Li, S. Frolking, P.B. Pope, K.C. Wrighton, P.M. Crill, J.P. Chanton, S.R. Saleska, G.W. Tyson, V.I. Rich, M.B. Sullivan (2018). Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology. doi: 10.1038/s41564-018-0190-y.
- M.S. Jensen, L. Fredriksen, A.K. MacKenzie, P.B. Pope, I. Leiros, P. Chylenski, A.K. Williamson, T. Christopeit, H. Østby, G. Vaaje-Kolstad, V.G.H. Eijsink (2018). Discovery and characterization of a thermostable two-domain GH6 endoglucanase from a compost metagenome. PLoS One. 13; e0197862
- A.E. Naas, L.M. Solden, A.D. Norbeck, H. Brewer, L. H. Hagen, I. M. Heggenes, A.C. McHardy, R.I. Mackie, L. Paša-Tolić, M.Ø. Arntzen, V.G.H. Eijsink, N.M. Koropatkin, M. Hess, K.C. Wrighton, P.B. Pope (2018). "Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the Type IX secretion system. Microbiome. DOI: 10.1186/s40168-018-0421-8
- K. Rudi, I.L. Angell, P.B. Pope, J.O. Vik, S.R. Sandve, L.G. Snipen (2017). A stable core gut microbiota across fresh-to salt water transition for farmed Atlantic salmon. Appl. Environ. Microb. doi: 10.1128/AEM.01974-17
- G. Minniti, L.H. Hagen, D. Porcellato, S.M. Jørgensen, *P.B. Pope, *G. Vaaje-Kolstad (2017). The skin-mucus microbial community of farmed Atlantic salmon (Salmo salar). Front. Microbiol. doi: 10.3389/fmicb.2017.02043 * equal contributions.
- M.Ø. Arntzen, A. Várnai, R.I. Mackie, V.G.H. Eijsink, P.B. Pope (2017). Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of Carbohydrate-Active Enzymes with versatile polysaccharide-degrading capacity. Environ Microbiol. 19; 2701-2714.
- B.J. Kunath, A. Bremges, A. Weimann, A.C. McHardy, P.B. Pope (2017). Metagenomics and CAZyme Discovery. Methods Mol Biol. 1588;255-277
- J. Larsbrink, T.R. Tuveng, P.B. Pope, V. Bulone, V.G.H. Eijsink, H. Brumer, L.S. McKee (2017). Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis. Data in Brief. 11; 484-490.
- J. Larsbrink, T.R. Tuveng, P.B. Pope, V. Bulone, V.G.H. Eijsink, H. Brumer, L.S. McKee (2017). Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis. J Proteomics. 156; 63-74.
- D. Paez-Espino, I.-M.A. Chen, K. Palaniappan, A. Ratner, K. Chu, E. Szeto, M. Pillay, J. Huang, V.M. Markowitz, T. Nielsen, M. Huntemann, T.B.K. Reddy, G.A. Pavlopoulos, M.B. Sullivan, B.J. Campbell, F. Chen, K. McMahon, S.J. Hallam, V. Denef, R. Cavicchioli, S.M. Caffrey, W.R. Streit, J. Webster, K.M. Handley, G.H. Salekdeh, N. Tsesmetzis, J.C. Setubal, P.B. Pope, W-T. Liu, A.R. Rivers, N.N. Ivanova, N.C. Kyrpides (2017). IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucl. Acids Res.45(D1); D457-D465.
- A. Weimann, K, Mooren, J.A. Frank, P.B. Pope, A. Bremges, A.C. McHardy (2016). From genomes to phenotypes: Traitar, the microbial trait analyzer. mSystems 1; 00101-16.
- J. Larsbrink, Y. Zhu, S.S. Kharade, K.J. Kwiatkowski, V.G.H. Eijsink, N.M. Koropatkin, M.J. McBride, P.B. Pope (2016). A Polysaccharide Utilization Locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin. Biotechnol. Biofuels. 9; 260.
- L.H. Hagen, J.A. Frank, M. Zamanzadeh, V.G.H. Eijsink, P.B. Pope, S.J. Horn, M.Ø. Arntzen (2016). Quantitative metaproteomics highlight the metabolic contributions of uncultured phylotypes in a thermophilic anaerobic digester. Appl. Environ. Microb. 83; e01955-16.
- Ö.C. Umu, C. Bäuerl, M. Oostindjer, P.B. Pope, P.E. Hernández, G. Pérez-Martínez, D.B. Diep (2016). The Potential of Class II Bacteriocins to Modify Gut Microbiota to Improve Host Health. PLoS One 11;e0164036.
- J.A. Frank, M.Ø. Arntzen, L. Sun, L.H. Hagen, A.C. McHardy, S.J. Horn, V.G.H. Eijsink, A. Schnürer, P.B. Pope (2016). Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome. mSystems 1; e00092-16
- A. Salgado-Flores, M. Bockwoldt, L.H. Hagen, P.B. Pope, M.A. Sundset (2016). A first insight into the fecal microbiota of the high Arctic muskoxen (Ovibos moschatus). Microbial Genomics doi: 10.1099/mgen.0.00006
- A. Salgado-Flores, L.H. Hagen, S.L. Ishaq, M. Zamanzadeh, A.D. Wright, P.B. Pope, M.A. Sundset (2016). Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions. PLoS One 11; e0155213.
- J.A. Frank, Y. Pan, A. Tooming-Klunderud, V.G.H. Eijsink, A.C. McHardy, A.J. Nederbragt, P.B. Pope (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Sci. Rep. 6; 25373.
- G. Henderson, F. Cox, S. Ganesh, A. Jonker, W. Young, Global Rumen Census Collaborators, and P. H. Janssen (2015). Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Sci. Rep. 5; p14567.
- L. Sun, P.B. Pope, V.G.H. Eijsink, A. Schnürer (2015). Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure. Microb Biotechnol. 8; p815.
- A.E. Naas, A.K. MacKenzie, B. Dalhus, V.G.H. Eijsink, P.B. Pope (2015). Structural features of a Bacteroidetes-affiliated cellulase linked to a polysaccharide utilization locus. Sci. Rep. 5; p11666.
- L.H. Hagen, V. Vivekanand, P.B. Pope, V.G.H. Eijsink, S.J. Horn (2015). The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Appl. Microb Biotechnol. 99; p5749.
- Ö.C.O. Umu, J.A. Frank, J.U. Fangel, M. Oostindjer, C. Souza da Silva, E.J. Bolhuis, G. Bosch, W.G.T. Willats, *P.B. Pope and *D.B. Diep (2015). Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. Microbiome 3; p16. * equal contributions.
- A.K. Mackenzie, A.E. Naas, J. Mravec, S. Kracun, J. Schückel, J.U. Fangel, J.W. Agger, W.G.T. Willats, V.G.H. Eijsink, P.B. Pope (2015). A Polysaccharide utilisation locus from an uncultured Bacteroidetes phylotype infers ecological adaptation and substrate versatility. Appl. Environ. Microb. 81; p187.
- S. Konietzny, P.B. Pope, A. Weimann, A.C. McHardy (2014). Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders Biotechnol. Biofuels 7; p124.
- L.H. Hagen, V. Vivekanand, R. Linjordet, P.B. Pope, V.G.H. Eijsink, S.J. Horn (2014). Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in CSTR systems Bioresour Technol. 171: p350.
- A.E. Naas, A.K. Mackenzie, J. Mravec, J. Schückel, W.G.T. Willats, V.G.H. Eijsink, P.B. Pope (2014). Do rumen Bacteroidetes utilize an alternative mechanism for cellulose degradation? mBio 5; e01401-14.
- Y. Zhou, P.B. Pope, et al. (2014). Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community Sci. Rep. 4; p5288.
- C.P. Rosewarne, P.B. Pope, J.L. Cheung and M. Morrison (2014). Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum BacteroidetesJ. Ind. Microbiol. Biot. 41(3); p601.
- E. Avershina, O. Storrø, T. Øyen, R. Johnsen, P.B. Pope and K. Rudi (2014). Major fecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children FEMS Microbiol Ecol. 87(1); p280.
- Ö.C.O. Umu, M. Oostindjer, P.B. Pope, B. Svihus, B. Egelandsdal, I.F. Nes and D.B. Diep (2013). Potential applications of gut microbiota to control human physiology. Antonie van Leeuwenhoek 104(5); p609.
- K.E. Præsteng, P.B. Pope, R.I. Mackie, I.K.O. Cann, S.D. Mathiesen, A.S. Blix, L.P. Folkow, V.G.H. Eijsink and M.A. Sundset (2013). Probiotic dosing of a highly fibrolytic Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer Microbiol Ecol. 66(4); p840.
- P.B. Pope, V. Vivekanand, V.G.H Eijsink and S.J. Horn (2013). Microbial Community Structure in a Biogas Digester Utilizing the Marine Energy Crop Saccharinalatissima3Biotech 3(5); p407.
- A. Weimann, Y. Trukhina, P.B. Pope, S.G.A. Konietzny and A.C. McHardy (2013). De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes. Biotechnol. Biofuels 6 (1); p24.
- C.R. Kleiveland, L.T.O. Hult, K. Kuczkowska, M. Jacobsen, T. Lea and P.B. Pope (2012). Draft Genome Sequence of the Methane Oxidizing Bacterium Methylococcus capsulatus(Texas). J. Bacteriol. 194(23); p6626.
- A.K. Mackenzie, P.B. Pope, H.L. Pedersen, R.Gupta, M. Morrison, W.G.T. Willats and V.G.H. Eijsink (2012). Two SusD-like proteins encoded within a Polysaccharide Utilization Locus of an uncultured ruminant Bacteroidetes phylotype bind strongly to cellulose. Appl. Environ. Microb. 78(16); p5935.
- P.B. Pope, A.K. Mackenzie, I. Gregor, W. Smith, M.A. Sundset, A.C. McHardy, M. Morrison and V.G.H. Eijsink (2012). Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS ONE 7(6); p38571.
- P.B. Pope, W. Smith, S.E. Denman, S.G. Tringe, K. Barry, P. Hugenholtz, C.S. McSweeney, A.C. McHardy and M. Morrison (2011). Isolation and cultivation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science 333(7); p646.
- K.Patil, P. Haider, P.B. Pope, P.J. Turnbaugh, M. Morrison, T. Scheffer, and A.C. McHardy (2011). Taxonomic metagenome sequence assignment with structured output models. Nat. Methods. 8(3); p191.
- C.P. Rosewarne, P.B. Pope, S.E. Denman, C.S. McSweeney, P. OCuiv and M. Morrison (2011). High-yield and phylogenetically robust methods of DNA recovery for metagenomic analysis of the microbial biofilms adherent to plant biomass in the herbivore gut. Microb. Ecol. 61(2); p448.
- P.B. Pope, M. Totsika, D. Aguirre de Carcer, M. A. Schembri and M. Morrison (2011). Muramidases found in the foregut microbiome of the Tammar wallaby can direct cell-aggregation and biofilm formation. ISME J. 5(2); p341.
- P.B. Pope, S.E. Denman, M. Jones, S.G. Tringe, K. Barry, S.A. Malfatti, A.C. McHardy, J-F. Cheng, P. Hugenholtz, C.S. McSweeney, and M. Morrison (2010). Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different to other herbivores. Proc. Natl. Acad. Sci. USA 107 (33); p14793.
- M. Morrison, P.B. Pope, S. Denman and C. McSweeney (2009). Plant biomass degradation by gut microbiomes: More of the same or something new? Curr Opin Biotechnol. 20 (3); p358.
- P.B. Pope and BKC Patel (2008). Metagenomics of a Freshwater toxic Cyanobacterial Bloom. FEMS Microbiol Ecol. 64; p9.
Undervisning
BIO326: Genome Sequencing: tools and analysis
Using the latest technologies and computational strategies, this course will explore the different approaches used to recover and reconstruct genome sequences from various biological sources including prokaryotic and eukaryotic cells, as well as complex microbial communities (i.e. microbiomes).
More information can be found HERE.
BIN420: Bioinformatics for functional meta-omics
This course includes an array of contrasting tools to decrypt microbial communities, including those that assess community structure (metagenomics, predictive genome-reconstruction) and function (metatranscriptomics, metaproteomics). More information can be found via the NMBU and NORBISwebsites
HFX407 Emissions and Microbiota: a path to sustainable animal production
Qualify the students to conduct, evaluate and discuss experiments and concepts in (animal nutrition) research related to feed digestion by microbial fermentation and emissions of methane, carbon dioxide and ammonia. More information can be here.Genome Science Msc Program
The Genome Science study combines the disciplines of genetics, genome biology, genome technologies, statistics and bioinformatics. More information can be found here.
Forskning og prosjekter
Forskningsprosjekter
Mer om meg og CV
Grants
2021-2025 A. Alberti (P.B. Pope: WP Leader). Horizon 2020. “3D-omics” Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal production. Funding: €10,073,540, NMBU: €978,933. 2021-2026 D. Morgavi (P.B. Pope: WP Leader). Horizon 2020. “HoloRuminant” Understanding microbiomes of the ruminant holobiont. Funding: €10,985,021, NMBU: €620,560. 2021-2023 P. Cermeno (P.B. Pope: Partner). Horizon 2020. "PRODIGIO": Developing early-warning systems for improved microalgae PROduction and anaerobic DIGestIOn". Funding: €2,452,941, NMBU: €483,625. 2020-2023
P.B. Pope. Coordinator. BlueBio CoFund (ERA-Net). “ImprovAFish” Improving aquaculture sustainability by modulating the feed-microbiome-host axis in Fish. Funding: 1,940,000 EUR
2020-2024
P.B. Pope. PI. Novo Nordisk Foundation “SuPA[cow]”: Sustainable production of animals by optimizing the feed-microbiome-host axis. Funding: 1,340,000 EUR.
2019-2022
P.B. Pope. PI. NMBU. “BoGAS”: The effect of Bovine host genetics on microbiota and methane GAS emissions. Funding: 308,768 EUR.
2019-2022
M. Øverland (P.B. Pope: WP Leader). The Research Council of Norway (RCN) (HavBruk). Project title: Trained immunity and nutritional programming for resilient salmon. Funding: 1,030,800 EUR
2018-2020
T.R. Hvidsten, S.R. Sandve, P.B. Pope. NMBU. Project title: “MetaNorSE”: Meta-omic interpretation of Norwegian Salmon gastrointestinal Ecosystems. Funding: 208,588 EUR.
2016-2020
P.B. Pope. PI. RCN (FriMedBio). Project title: “Back to basics”: simplifying microbial communities to decrypt complex interactions. Funding: 1,030,800 EUR
2014-2019
P.B. Pope. PI. The European Research Council. Project title: Interpreting the irrecoverable microbiota in digestive ecosystems. Funding: 1,477,875 EUR.
2015-2018
B. Westereng (P.B. Pope: WP leader). RCN (BIONÆR). Exploring tree-derived hemicelluloses as a source for prebiotics. Funding: 2,310,055 EUR
2012-2015
P.B. Pope. PI. RCN (FriMedBio). Project title: The newly discovered Polysaccharide Utilisation Loci linked to multiple cellulolytic systems in nature: how does it work? Funding: 596,000 EUR.
2011-2013
P.B. Pope and V. Eijsink. Marie Curie International Incoming Fellowship, European Commission, Seventh Framework Programme (FP7). Project title: Learning from the locals: A metagenomics investigation into the plant biomass degrading capacity in Norwegian native herbivores. Funding: 209,000 EUR.
2010
P.B. Pope and V. Eijsink. RCN-BILAT. Project title: Bioprospecting in the Svalbard reindeer microbiome - establishing a Norwegian-Australian joint research effort. Funding: 55,000 EUR.
Professional Achievements:
- 2019 Awarded ERA-Net project as Coordinator.
- 2019 Awarded Ascending Investigator Fellowship from The Novo Nordisk Foundation
- 2016 Awarded FRIMEDBIO project from The Research Council of Norway.
- 2015 International Board of Early-Mid Career Ambassadors of ISME
- 2014 Awarded ERC starting grant from the European Commission.
- 2012 Awarded FRIMEDBIO project from The Research Council of Norway.
- 2011 Member of Editorial Board for 3Biotech (Springer Journals).
- 2011 Member of Management Committee for COST action ES1103.
- 2011 Awarded Marie Curie International Incoming Fellowship.
- 2009 CSIRO recognition award.
- 2008 International Society of Microbial Ecology (ISME) travel award.
- 2006 National finalist for “showcasing CRC PhD’s”, Cooperative Research Centres Association.
- 2002/ 2001/ 1999 3x Griffith Award for Academic Excellence.