BIN303 Biometrical Methods in Breeding
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Showing course contents for the educational year 2022 - 2023 .
Course responsible: Gunnar Klemetsdal
Teachers: Xijiang Yu, Morten Lillemo, Theodorus Hendrikus Elisabeth Meuwissen
ECTS credits: 5
Faculty: Faculty of Biosciences
Teaching language: EN
Teaching exam periods:
This course is planned in the autumn parallell (Sept-Dec) 2021, but may be given more flexibly if it suits the participants.
Course frequency: Other. When enough students.
First time: Study year 2021-2022
MSc students in Plant breedig and Animal/Aquaculture breeding.
Potential plan for the course - to be deliberated by participants and teachers. - There is not room for all the mentioned topics !
You will get knowledge on theory for prediction of breeding values based on mixed models, genomic and pedigree based relationship, including estimation of variance components.
You will be able to calculate breeding or genetic values for plant and animal breeding organisations for real data and with industry data programs.
In general you will have better competency in data handling, programming, linear algebra, and estimation theory; and understanding of plant and animal breeding programs
Colloquia/Lectures in full group, and possibly in subgroups, depending on number of participants and where they live / work. Own studies of given publications. Estimation of variance components and calculations of breeding values of own, realistically big, data sets. Presentations for paricipants and teachers.
Teacher participation in colloquia and also in lectures if enough students. Advice for term papers and other exercises.
See Course contents.
The lectures and presentations in the course and assigned scientific papers.
Curriculum partly depends on needs and wishes of the participants in the course.
Chapter 27 in Lynch and Walsh (1998) : 'Genetics and Analysis of Quantitative Traits' shows some parts of the curriculum intended.
Some papers on estimation of variance components. Manuals for vce/pest, asreml, dmu, R (BLR), or other variance component estimation programs also are important sources of information.
BIN301. Plant or animal breeding up to PhD level. Linear algebra. Matrix handling.
MSc students that want more challenges in breeding beyond what is given in other breeding courses may consider taking this course together with PhD students.
Animal or plant breeding to MSc level, including pedigree and genomic based relationship.
Some linear algebra. Vector and matrix handling.
Some data programming.
Participation in colloquia.
Presentation of calculation of breeding values in an own data set of size relevant for plant or animal breeding organizations.
Commenting / being opponent to / other participants' presentations.
Evalutation of term paper showing results of calculations of breeding values for real data with state of the art programs used by breeding organizations like DMU, asreml, R (BLR), ...
Passed / Failed
125 hours of study, including colloquia and participation in study groups for 25 hours.
Special requirements in Science
Type of course:
Approximately 12.5 hours colloquium/lectures and 12.5 hours of exercises.
The course is given when there are enough interested participants. Lectures and colloquia initiated by the teacher will be held for more than 4 participants. If fewer students, some teacher supervision may be provided.
MSc students with enough relevant background may participate (with course code BIN303).
Teacher evaluated (no external examiner).
Examination details: Term paper: Passed / Not Passed